Selected software

This list is by no means exhaustive but represents the software that we use or consider using.

Free of charge software

• dChip from Wong Lab, Harvard
• R,  a collaborative effort with contributions from all over the world
• Bioconductor, contributors from all over the world
• Base (BioArray Software Environment) from Lund University
• GeneCluster2 from Whitehead Institute, Center for Genome Research, Cambridge, MA
• MEV (Multi Experiment Viewer) from TIGR 
• GenePublisher from CBS, Technical University of Denmark

Commercial software

• MAS5/GCOS and DMT
• Partek
• Ingenuity

Links to link-collections

• Stanford Microarray Database
• Stanford collection of resources
• Stanford collection of software
• Link collection by Jaak Vilo, EBI
• Link collection by CardioGenomics, Harvard Medical School
• Software collection by GenomeBiology